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  5. Sacu_v1.1_s0072.g016907

Sacu_v1.1_s0072.g016907


Description : regulatory factor *(NCP/RCB) of plastid-encoded RNA polymerase activity & original description: CDS=37-813


Gene families : OG0004780 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004780_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0072.g016907
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00107860 evm_27.TU.AmTr_v1... Thioredoxin-like fold domain-containing protein MRL7L,... 0.03 OrthoFinder output from all 47 species
AMTR_s00066p00167590 evm_27.TU.AmTr_v1... Thioredoxin-like fold domain-containing protein MRL7,... 0.03 OrthoFinder output from all 47 species
Als_g32458 No alias regulatory factor *(NCP/RCB) of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Ceric.31G033000.1 Ceric.31G033000 regulatory factor *(NCP/RCB) of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Dcu_g10796 No alias regulatory factor *(NCP/RCB) of plastid-encoded RNA... 0.05 OrthoFinder output from all 47 species
Ehy_g16564 No alias regulatory factor *(NCP/RCB) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os01g61320.1 LOC_Os01g61320 Thioredoxin-like fold domain-containing protein MRL7... 0.03 OrthoFinder output from all 47 species
LOC_Os05g34470.1 LOC_Os05g34470 Thioredoxin-like fold domain-containing protein MRL7L... 0.02 OrthoFinder output from all 47 species
Len_g41920 No alias regulatory factor *(NCP/RCB) of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Tin_g13854 No alias regulatory factor *(NCP/RCB) of plastid-encoded RNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA

No InterPro domains available for this sequence

No external refs found!