Sacu_v1.1_s0070.g016750 (PRH75)

Aliases : PRH75

Description : not classified & original description: CDS=177-2189

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0070.g016750

Target	Alias	Description	ECC score	Gene Family Method
Adi_g055951	emb1138	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086708	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g11630	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g10440	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Ala_g14243	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g23186	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Aop_g10862	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0014.g013637	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0027.g023578	emb1138	not classified & original description: CDS=239-2545	0.04	OrthoFinder output from all 47 species
Ceric.01G054800.1	PRH75, Ceric.01G054800	not classified & original description: pacid=50590947...	0.03	OrthoFinder output from all 47 species
Ceric.38G064300.1	PRH75, Ceric.38G064300	not classified & original description: pacid=50580225...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020734.25	PMH2, ATRH53	DEAD-box ATP-dependent RNA helicase 53, mitochondrial...	0.01	OrthoFinder output from all 47 species
Ehy_g02845	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Ehy_g15362	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g21458	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_04849	emb1138	RH3 plastidial RNA basal splicing factor	0.02	OrthoFinder output from all 47 species
Gb_35745	emb1138	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species
LOC_Os12g41715.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.02	OrthoFinder output from all 47 species
Len_g08865	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_2998g0020	emb1138	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Pir_g16512	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g30474	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c1_40060V3.1	emb1138, Pp3c1_40060	DEAD box RNA helicase (RH3)	0.02	OrthoFinder output from all 47 species
Ppi_g43098	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Solyc07g044760.3.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Spa_g06515	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Spa_g08414	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e010187_P002	PRH75, Zm00001e010187	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	HCCA
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	HCCA
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031124	mRNA 3'-end processing	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0047746	chlorophyllase activity	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012562	GUCT	529	626
IPR001650	Helicase_C	340	439
IPR011545	DEAD/DEAH_box_helicase_dom	117	295

External Links

No external refs found!

Sacu_v1.1_s0070.g016750 (PRH75)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation