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  5. Sacu_v1.1_s0066.g016088

Sacu_v1.1_s0066.g016088


Description : not classified & original description: CDS=1-1020


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0066.g016088

Target Alias Description ECC score Gene Family Method Actions
AT1G74400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g28189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07904 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene49181.t1 Aspi01Gene49181 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene70663.t2 OTP84, Aspi01Gene70663 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001613 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: CDS=195-1385 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008781 No alias not classified & original description: CDS=1-2346 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012363 No alias not classified & original description: CDS=1-2442 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012382 OTP84 not classified & original description: CDS=1-2100 0.04 OrthoFinder output from all 47 species
Azfi_s0028.g023878 No alias not classified & original description: CDS=1-2883 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g030992 No alias not classified & original description: CDS=1-2877 0.03 OrthoFinder output from all 47 species
Azfi_s0059.g034666 No alias not classified & original description: CDS=1-1770 0.05 OrthoFinder output from all 47 species
Azfi_s0164.g054282 No alias not classified & original description: CDS=1-4443 0.03 OrthoFinder output from all 47 species
Azfi_s0173.g055844 CRR22 not classified & original description: CDS=1-1863 0.03 OrthoFinder output from all 47 species
Azfi_s0175.g055975 No alias not classified & original description: CDS=1-4965 0.02 OrthoFinder output from all 47 species
Azfi_s0197.g057356 No alias not classified & original description: CDS=1-2922 0.04 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.07 OrthoFinder output from all 47 species
Cba_g19570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20428 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.15G051800.1 VAC1, ECB2,... not classified & original description: pacid=50639747... 0.05 OrthoFinder output from all 47 species
Ceric.1Z242100.1 CRR22, Ceric.1Z242100 not classified & original description: pacid=50573437... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g42852 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38653 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
Msp_g17108 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07581 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25933 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g05196 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g04430 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g17070 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g19088 CRR21 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g23601 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59214 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015038 CRR22 not classified & original description: CDS=1-1620 0.03 OrthoFinder output from all 47 species
Smo78092 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Smo98551 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.06 OrthoFinder output from all 47 species
Tin_g16989 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 148 174
IPR002885 Pentatricopeptide_repeat 259 288
IPR002885 Pentatricopeptide_repeat 69 103
No external refs found!