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  5. Sacu_v1.1_s0065.g016024

Sacu_v1.1_s0065.g016024 (FIB2, ATFIB2)


Aliases : FIB2, ATFIB2

Description : not classified & original description: CDS=123-851


Gene families : OG0004335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004335_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0065.g016024

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218020 FIB1, ATFIB1,... RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Azfi_s0093.g043290 FIB2, ATFIB2 not classified & original description: CDS=212-970 0.03 OrthoFinder output from all 47 species
Cba_g27536 FIB2, ATFIB2 methyltransferase component *(Nop1/fibrillarin) of... 0.06 OrthoFinder output from all 47 species
Ceric.02G070500.1 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.06 OrthoFinder output from all 47 species
Cre02.g077300 FIB2, ATFIB2 RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Dac_g15986 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.03 OrthoFinder output from all 47 species
Dcu_g15289 FIB2, ATFIB2 methyltransferase component *(Nop1/fibrillarin) of... 0.03 OrthoFinder output from all 47 species
Dde_g03691 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.03 OrthoFinder output from all 47 species
LOC_Os02g57590.1 FIB2, ATFIB2,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.04 OrthoFinder output from all 47 species
LOC_Os05g08360.1 FIB1, ATFIB1,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 OrthoFinder output from all 47 species
MA_124463g0010 FIB2, ATFIB2 methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 OrthoFinder output from all 47 species
Mp2g12880.1 FIB1, ATFIB1,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 OrthoFinder output from all 47 species
Pir_g60296 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0018142 protein-DNA covalent cross-linking IEP HCCA
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR000692 Fibrillarin 66 161
IPR000692 Fibrillarin 162 233
No external refs found!