Sacu_v1.1_s0064.g015839


Description : component *(uL6) of large ribosomal-subunit (LSU) proteome & original description: CDS=1-570


Gene families : OG0001493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001493_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0064.g015839

Target Alias Description ECC score Gene Family Method Actions
AT1G33120 No alias Ribosomal protein L6 family 0.04 OrthoFinder output from all 47 species
AT1G33140 PGY2 Ribosomal protein L6 family 0.03 OrthoFinder output from all 47 species
Als_g62254 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g00197 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001532.12 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre12.g494050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01016795001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os09g31180.1 LOC_Os09g31180 component RPL9 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Lfl_g20813 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Nbi_g19909 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c10_8500V3.1 Pp3c10_8500 Ribosomal protein L6 family 0.01 OrthoFinder output from all 47 species
Pp3c14_8600V3.1 Pp3c14_8600 Ribosomal protein L6 family 0.03 OrthoFinder output from all 47 species
Sam_g12948 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g32375 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g42265 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Solyc06g073310.3.1 Solyc06g073310 component RPL9 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Solyc12g096700.2.1 Solyc12g096700 component RPL9 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g22811 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e025404_P001 Zm00001e025404 component RPL9 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e029810_P003 Zm00001e029810 component RPL9 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e036699_P002 Zm00001e036699 component RPL9 of LSU proteome component 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 12 86
IPR020040 Ribosomal_L6_a/b-dom 99 177
No external refs found!