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  5. Sacu_v1.1_s0063.g015640

Sacu_v1.1_s0063.g015640


Description : regulatory RNA helicase *(RH20/RH30) of virus replication & original description: CDS=129-1778


Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0063.g015640

Target Alias Description ECC score Gene Family Method Actions
Aop_g09685 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Dcu_g10540 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12055 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.01 OrthoFinder output from all 47 species
Pnu_g10603 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Spa_g01558 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 358 467
IPR011545 DEAD/DEAH_box_helicase_dom 151 320
No external refs found!