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  5. Sacu_v1.1_s0062.g015525

Sacu_v1.1_s0062.g015525


Description : ABC1 atypical protein kinase & original description: CDS=331-3087


Gene families : OG0000250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0062.g015525
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene10744.t1 Aspi01Gene10744 ABC1 atypical protein kinase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55723.t1 Aspi01Gene55723 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030831 No alias not classified & original description: CDS=35-2710 0.03 OrthoFinder output from all 47 species
Sam_g14229 No alias ABC1 atypical protein kinase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28657 No alias ABC1 atypical protein kinase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 563 589
IPR002885 Pentatricopeptide_repeat 58 83
IPR002885 Pentatricopeptide_repeat 592 618
IPR002885 Pentatricopeptide_repeat 490 519
IPR002885 Pentatricopeptide_repeat 285 332
IPR002885 Pentatricopeptide_repeat 185 232
IPR002885 Pentatricopeptide_repeat 84 131
IPR002885 Pentatricopeptide_repeat 387 434
IPR004147 ABC1_dom 345 583
No external refs found!