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  5. Sacu_v1.1_s0059.g015163

Sacu_v1.1_s0059.g015163


Description : substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin ligase complex & original description: CDS=64-2703


Gene families : OG0006597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0059.g015163
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene64002.t1 Aspi01Gene64002 substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Cba_g03265 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Cre04.g226450 No alias RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Dcu_g08213 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01020240001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Smo78344 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 274 310
IPR001680 WD40_repeat 494 529
IPR001680 WD40_repeat 402 438
IPR001680 WD40_repeat 315 353
IPR002885 Pentatricopeptide_repeat 721 766
IPR002885 Pentatricopeptide_repeat 639 665
No external refs found!