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  5. Sacu_v1.1_s0058.g014899

Sacu_v1.1_s0058.g014899


Description : methylation reader *(MBD5-6) & original description: CDS=290-1816


Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0058.g014899

Target Alias Description ECC score Gene Family Method Actions
Ala_g27247 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g37130 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12062.t1 ATMBD6, MBD6,... methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44531.t1 ATMBD6, MBD6,... methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23180 MBD05, MBD5, ATMBD5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g11942 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024953001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_03340 MBD05, MBD5, ATMBD5 methylation reader (MBD5-6) 0.02 OrthoFinder output from all 47 species
MA_411073g0010 MBD05, MBD5, ATMBD5 methylation reader (MBD5-6) 0.03 OrthoFinder output from all 47 species
Msp_g26391 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28774 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 271 328
No external refs found!