Aliases : LBD4
Description : AS2/LOB-type transcription factor & original description: CDS=188-1168
Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Sacu_v1.1_s0057.g014745 | |
Cluster | HCCA: Cluster_3 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G07900 | LBD1 | LOB domain-containing protein 1 | 0.03 | OrthoFinder output from all 47 species | |
AT1G31320 | LBD4 | LOB domain-containing protein 4 | 0.03 | OrthoFinder output from all 47 species | |
AT2G40470 | LBD15, ASL11 | LOB domain-containing protein 15 | 0.03 | OrthoFinder output from all 47 species | |
AT2G42440 | No alias | Lateral organ boundaries (LOB) domain family protein | 0.03 | OrthoFinder output from all 47 species | |
AT5G06080 | LBD33 | LOB domain-containing protein 33 | 0.02 | OrthoFinder output from all 47 species | |
AT5G63090 | LOB | Lateral organ boundaries (LOB) domain family protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g013687 | LBD4 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g26972 | LBD15, ASL11 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01003548001 | ASL1, LBD36 | RNA biosynthesis.transcriptional activation.AS2/LOB... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01027620001 | LBD19 | RNA biosynthesis.transcriptional activation.AS2/LOB... | 0.02 | OrthoFinder output from all 47 species | |
Gb_10524 | LBD15, ASL11 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g17810.1 | LBD11, LOC_Os03g17810 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
MA_16646g0010 | LBD27, SCP | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
Mp4g02620.1 | LBD12, ASL5, PCK1 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
Mp4g10500.1 | LBD25 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
Mp7g14810.1 | LBD25 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
Ore_g29367 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g30887 | LBD4 | AS2/LOB-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Pnu_g25313 | AS2 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g11808 | AS2 | AS2/LOB-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0108.g020470 | LOB | AS2/LOB-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g069440.3.1 | LBD4, Solyc02g069440 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
Solyc06g005090.3.1 | LBD11, Solyc06g005090 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e002692_P001 | LBD18, Zm00001e002692 | transcription factor (AS2/LOB) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e029898_P001 | LBD22, Zm00001e029898 | transcription factor (AS2/LOB) | 0.01 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0004499 | N,N-dimethylaniline monooxygenase activity | IEP | HCCA |
MF | GO:0004743 | pyruvate kinase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005507 | copper ion binding | IEP | HCCA |
BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
BP | GO:0006096 | glycolytic process | IEP | HCCA |
BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
MF | GO:0009055 | electron transfer activity | IEP | HCCA |
BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009522 | photosystem I | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
MF | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | IEP | HCCA |
MF | GO:0030145 | manganese ion binding | IEP | HCCA |
MF | GO:0030247 | polysaccharide binding | IEP | HCCA |
MF | GO:0030955 | potassium ion binding | IEP | HCCA |
MF | GO:0031420 | alkali metal ion binding | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
MF | GO:0050661 | NADP binding | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
MF | GO:2001070 | starch binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR004883 | LOB | 82 | 179 |
No external refs found! |