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  5. Sacu_v1.1_s0054.g014299

Sacu_v1.1_s0054.g014299 (PTAC3)


Aliases : PTAC3

Description : cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3) & original description: CDS=177-3065


Gene families : OG0004426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0054.g014299
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT3G04260 PTAC3 plastid transcriptionally active 3 0.03 OrthoFinder output from all 47 species
Adi_g020728 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
Aop_g10889 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Cba_g34156 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Dde_g09087 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
LOC_Os10g32540.1 PTAC3, LOC_Os10g32540 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
MA_7597000g0010 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Mp2g04680.1 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Pir_g19801 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Ppi_g02363 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003034 SAP_dom 642 673
No external refs found!