Sacu_v1.1_s0052.g014065

Description : not classified & original description: CDS=1-618

Gene families : OG0001894 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001894_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0052.g014065
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
Cba_g00981	No alias	basal transcription factor *(TFIIb) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os09g36440.1	LOC_Os09g36440	basal transcription factor (TFIIb)	0.02	OrthoFinder output from all 47 species
Lfl_g08032	No alias	basal transcription factor *(TFIIb) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
MF	GO:0017025	TBP-class protein binding	IEA	Interproscan
MF	GO:0140296	general transcription initiation factor binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
MF	GO:0008199	ferric iron binding	IEP	HCCA
MF	GO:0008235	metalloexopeptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0018142	protein-DNA covalent cross-linking	IEP	HCCA
BP	GO:0018143	nucleic acid-protein covalent cross-linking	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
MF	GO:0070006	metalloaminopeptidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013150	TFIIB_cyclin	134	204

External Links

No external refs found!