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  5. Sacu_v1.1_s0050.g013850

Sacu_v1.1_s0050.g013850


Description : not classified & original description: CDS=1-1389


Gene families : OG0000670 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000670_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0050.g013850
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Adi_g117657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g15924 AT-GT2, GT2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03238 emb2746 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01649 AT-GT2, GT2 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 356 438
IPR044822 Myb_DNA-bind_4 99 181
No external refs found!