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  5. Sacu_v1.1_s0047.g013495

Sacu_v1.1_s0047.g013495


Description : CAMTA-type transcription factor & original description: CDS=95-2851


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0047.g013495
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Adi_g022445 No alias CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10971 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G061900.1 Ceric.07G061900 CAMTA-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g06503 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46224 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05100 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_04014 No alias transcription factor (CAMTA) 0.02 OrthoFinder output from all 47 species
LOC_Os07g43030.1 CAMTA3, SR1,... transcription factor (CAMTA) 0.02 OrthoFinder output from all 47 species
Lfl_g34966 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_16615g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Ore_g08907 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17074 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g015650.3.1 Solyc05g015650 transcription factor (CAMTA) 0.02 OrthoFinder output from all 47 species
Spa_g30019 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
InterPro domains Description Start Stop
IPR005559 CG-1_dom 27 140
IPR002110 Ankyrin_rpt 563 653
IPR000048 IQ_motif_EF-hand-BS 785 804
IPR000048 IQ_motif_EF-hand-BS 705 722
IPR002909 IPT_dom 384 468
No external refs found!