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  5. Sacu_v1.1_s0047.g013483

Sacu_v1.1_s0047.g013483


Description : not classified & original description: CDS=659-1114


Gene families : OG0001159 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0047.g013483

Target Alias Description ECC score Gene Family Method Actions
Als_g21741 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g32679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58735 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene66341.t1 Aspi01Gene66341 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_18731 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g07850.1 LOC_Os01g07850 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10428538g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_7437g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9349606g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g30062 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0171.g024374 No alias not classified & original description: CDS=151-678 0.04 OrthoFinder output from all 47 species
Solyc01g103630.4.1 Solyc01g103630 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004360 Glyas_Fos-R_dOase_dom 11 130
No external refs found!