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  5. Sacu_v1.1_s0044.g013076

Sacu_v1.1_s0044.g013076


Description : not classified & original description: CDS=1-1854


Gene families : OG0000647 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000647_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0044.g013076

Target Alias Description ECC score Gene Family Method Actions
AT1G29300 UNE1 Plant protein of unknown function (DUF641) 0.02 OrthoFinder output from all 47 species
AT2G32130 No alias Plant protein of unknown function (DUF641) 0.02 OrthoFinder output from all 47 species
Als_g43811 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g36119 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene60528.t1 Aspi01Gene60528 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G053000.1 Ceric.06G053000 not classified & original description: pacid=50620800... 0.03 OrthoFinder output from all 47 species
Ceric.23G039100.1 Ceric.23G039100 not classified & original description: pacid=50610817... 0.04 OrthoFinder output from all 47 species
Dac_g16835 No alias regulatory protein *(GIL1) of phytochrome-mediated... 0.02 OrthoFinder output from all 47 species
Dde_g19941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01551 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014172001 No alias Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os01g10680.1 LOC_Os01g10680 Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os05g11650.1 LOC_Os05g11650 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g29614 No alias regulatory protein *(GIL1) of phytochrome-mediated... 0.02 OrthoFinder output from all 47 species
Pir_g12592 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e031256_P001 Zm00001e031256 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR006943 DUF641_pln 194 260
No external refs found!