Sacu_v1.1_s0043.g012930 (TTN8, ATSMC1, SMC1)

Aliases : TTN8, ATSMC1, SMC1

Description : component *(SMC1/TTN8) of cohesin regulator complex & original description: CDS=198-4679

Gene families : OG0004293 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004293_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0043.g012930

Target	Alias	Description	ECC score	Gene Family Method
AT3G54670	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes (SMC) family protein	0.03	OrthoFinder output from all 47 species
Aev_g04880	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Als_g01964	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Aob_g04491	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Mp1g29090.1	TTN8, ATSMC1, SMC1	component SMC1/TTN8 of cohesin regulator complex	0.03	OrthoFinder output from all 47 species
Ore_g13217	TTN8, ATSMC1, SMC1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g09962	TTN8, ATSMC1, SMC1	component *(SMC1/TTN8) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Solyc06g083870.3.1	TTN8, ATSMC1,...	component SMC1/TTN8 of cohesin regulator complex	0.02	OrthoFinder output from all 47 species
Zm00001e003843_P001	TTN8, ATSMC1,...	component SMC1/TTN8 of cohesin regulator complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010935	SMC_hinge	550	647
IPR003395	RecF/RecN/SMC_N	10	1210

External Links

No external refs found!

Sacu_v1.1_s0043.g012930 (TTN8, ATSMC1, SMC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation