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  5. Sacu_v1.1_s0042.g012656

Sacu_v1.1_s0042.g012656


Description : not classified & original description: CDS=1-324


Gene families : OG0000084 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000084_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0042.g012656
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Aev_g06919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72784.t1 Aspi01Gene72784 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0021.g015742 No alias not classified & original description: CDS=1-822 0.04 OrthoFinder output from all 47 species
Cba_g04809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09102 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g60329 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g56317 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g29138 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005537 No alias not classified & original description: CDS=1-528 0.03 OrthoFinder output from all 47 species
Sam_g33572 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g45765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g25184 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!