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  5. Sacu_v1.1_s0041.g012632

Sacu_v1.1_s0041.g012632


Description : not classified & original description: CDS=726-2756


Gene families : OG0000236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0041.g012632
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cba_g38369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G072100.1 Ceric.05G072100 not classified & original description: pacid=50579173... 0.03 OrthoFinder output from all 47 species
Sam_g30130 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
InterPro domains Description Start Stop
IPR006869 DUF547 449 581
IPR025757 MIP1_Leuzipper 122 199
No external refs found!