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  5. Sacu_v1.1_s0041.g012608

Sacu_v1.1_s0041.g012608


Description : not classified & original description: CDS=342-1457


Gene families : OG0000190 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000190_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0041.g012608

Target Alias Description ECC score Gene Family Method Actions
AT4G11410 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g077005 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g05840.2 LOC_Os01g05840 Short-chain dehydrogenase TIC 32, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os04g22380.1 LOC_Os04g22380 Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum... 0.03 OrthoFinder output from all 47 species
Lfl_g38370 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp6g21320.1 No alias Short-chain dehydrogenase TIC 32, chloroplastic... 0.01 OrthoFinder output from all 47 species
Pnu_g07778 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23484 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48884 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g025390.3.1 Solyc03g025390 component Tic32 of inner envelope TIC translocation system 0.04 OrthoFinder output from all 47 species
Solyc08g008060.1.1 Solyc08g008060 component Tic32 of inner envelope TIC translocation system 0.02 OrthoFinder output from all 47 species
Zm00001e016494_P001 Zm00001e016494 Short-chain dehydrogenase TIC 32, chloroplastic... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0045337 farnesyl diphosphate biosynthetic process IEP HCCA
BP GO:0045338 farnesyl diphosphate metabolic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:1902767 isoprenoid biosynthetic process via mevalonate IEP HCCA
InterPro domains Description Start Stop
IPR002347 SDR_fam 37 202
No external refs found!