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  5. Sacu_v1.1_s0041.g012514

Sacu_v1.1_s0041.g012514


Description : not classified & original description: CDS=1-2394


Gene families : OG0004660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004660_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0041.g012514
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cba_g26211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000545.36 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre06.g277050 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01000585001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os04g53770.1 LOC_Os04g53770 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g43205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007949 SDA1_C 432 793
IPR012977 SDA1_N 75 126
No external refs found!