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  5. Sacu_v1.1_s0040.g012315

Sacu_v1.1_s0040.g012315 (COL9)


Aliases : COL9

Description : BBX class-II transcription factor & original description: CDS=93-1382


Gene families : OG0001549 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0040.g012315

Target Alias Description ECC score Gene Family Method Actions
AT5G48250 No alias B-box type zinc finger protein with CCT domain 0.02 OrthoFinder output from all 47 species
Aob_g03550 COL9 BBX class-II transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000462 COL9 BBX class-II transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.15G034500.1 Ceric.15G034500 BBX class-II transcription factor & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g49230.2 COL9, LOC_Os02g49230 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
LOC_Os06g19444.1 COL9, LOC_Os06g19444 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Msp_g19193 COL9 BBX class-II transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02311 No alias BBX class-II transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g15254 No alias BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g020020.4.1 Solyc05g020020 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Tin_g12507 No alias BBX class-II transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 368 410
No external refs found!