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  5. Sacu_v1.1_s0040.g012273

Sacu_v1.1_s0040.g012273 (RPL10B)


Aliases : RPL10B

Description : not classified & original description: CDS=126-530


Gene families : OG0001847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001847_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0040.g012273

Target Alias Description ECC score Gene Family Method Actions
AT1G14320 SAC52, RPL10, RPL10A Ribosomal protein L16p/L10e family protein 0.03 OrthoFinder output from all 47 species
Ceric.10G071500.1 RPL10B, Ceric.10G071500 component *(uL16) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
LOC_Os11g11390.1 RPL10B, LOC_Os11g11390 component RPL10 of LSU proteome component 0.02 OrthoFinder output from all 47 species
MA_17326g0010 SAC52, RPL10, RPL10A component RPL10 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp4g23990.1 RPL10B component RPL10 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Nbi_g09642 RPL10B component *(uL16) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_4130V3.1 RPL10B, Pp3c11_4130 Ribosomal protein L16p/L10e family protein 0.02 OrthoFinder output from all 47 species
Pp3c7_22400V3.1 RPL10B, Pp3c7_22400 Ribosomal protein L16p/L10e family protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 20 77
IPR040911 Exostosin_GT47 4 102
No external refs found!