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  5. Sacu_v1.1_s0039.g012202

Sacu_v1.1_s0039.g012202


Description : MADS/AGL-type transcription factor & original description: CDS=1-846


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0039.g012202
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00218870 ANR1, AGL44,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00001p00266470 SOC1, AGL20,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT2G45650 AGL6 AGAMOUS-like 6 0.03 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.07 OrthoFinder output from all 47 species
Adi_g045544 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g106519 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06477 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27230 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40548 AGL13 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene17826.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19457.t1 AGL16, Aspi01Gene19457 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63673.t1 STK, AGL11,... MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene68989.t2 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16031 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.16G027500.1 AGL16, Ceric.16G027500 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g20590 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019883001 GL19, AGL19 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Gb_19897 AGL16 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os02g07430.1 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os03g11614.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os03g54170.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
LOC_Os05g11380.1 STK, AGL11,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os05g11414.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os07g01820.1 AGL7, AP1, LOC_Os07g01820 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os08g41950.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os09g32948.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Len_g29992 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g52703 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08300 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g33207 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g40583 AGL6 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
MA_15122g0010 AGL16 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_19296g0010 AGL9, SEP3 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_412147g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_57186g0010 AGL15 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.04 OrthoFinder output from all 47 species
MA_75656g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_9544285g0010 AGL42 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g02948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09567 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217 AGL15 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003070 AGL14 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006240 No alias not classified & original description: CDS=1-240 0.04 OrthoFinder output from all 47 species
Sam_g27238 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo121275 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Solyc02g091550.2.1 AGL21, Solyc02g091550 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc03g114840.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc04g005320.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc05g012020.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc06g069430.3.1 AGL8, FUL, Solyc06g069430 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc10g017630.3.1 SOC1, AGL20,... MADS-box protein SOC1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g06302 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14680 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e032487_P001 AGL61, DIA,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 13 57
No external refs found!