1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0039.g012173

Sacu_v1.1_s0039.g012173 (TPR5)


Aliases : TPR5

Description : polymerase-II assembly factor *(RPAP3) & original description: CDS=198-1745


Gene families : OG0003637 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003637_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0039.g012173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00163960 TPR5,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Adi_g107730 TPR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.20G085400.1 TPR5, Ceric.20G085400 polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.44 Hop2 No description available 0.01 OrthoFinder output from all 47 species
Ppi_g02133 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.04 OrthoFinder output from all 47 species
Smo409308 TPR5 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0097354 prenylation IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 226 255
IPR025986 RPAP3-like_C 393 482
No external refs found!