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  5. Sacu_v1.1_s0038.g012000

Sacu_v1.1_s0038.g012000


Description : not classified & original description: CDS=272-829


Gene families : OG0008326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0038.g012000

Target Alias Description ECC score Gene Family Method Actions
AT1G10522 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.04 OrthoFinder output from all 47 species
Als_g05250 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.05 OrthoFinder output from all 47 species
Aob_g09227 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Azfi_s0008.g011513 No alias not classified & original description: CDS=125-652 0.06 OrthoFinder output from all 47 species
Cba_g00285 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.02 OrthoFinder output from all 47 species
Dac_g03515 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Dcu_g24784 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os09g21460.1 LOC_Os09g21460 component PRIN2 of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Len_g22031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g05600.1 No alias component PRIN2 of plastid-encoded RNA polymerase 0.1 OrthoFinder output from all 47 species
Nbi_g38061 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Pir_g11027 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.02 OrthoFinder output from all 47 species
Ppi_g09394 No alias regulatory factor *(PRIN2) of plastid-encoded RNA... 0.06 OrthoFinder output from all 47 species
Sam_g35106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g006110.3.1 Solyc05g006110 component PRIN2 of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!