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  5. Sacu_v1.1_s0038.g011981

Sacu_v1.1_s0038.g011981


Description : component *(FES1) of FRI-C transcription effector complex & original description: CDS=276-4046


Gene families : OG0000859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0038.g011981
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Aob_g22679 No alias component *(FES1) of FRI-C transcription effector... 0.06 OrthoFinder output from all 47 species
Cba_g29388 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ceric.29G050700.1 Ceric.29G050700 component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Ehy_g16622 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Ehy_g16623 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Ehy_g18865 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
GSVIVT01021094001 FES1 RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
LOC_Os03g11580.1 LOC_Os03g11580 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os08g04170.1 LOC_Os08g04170 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Lfl_g05738 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Mp1g05400.1 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Nbi_g18034 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Pir_g18853 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Pir_g61674 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ppi_g11003 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Ppi_g43758 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Solyc04g064800.4.1 Solyc04g064800 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Spa_g08435 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000061 Surp 225 275
No external refs found!