Sacu_v1.1_s0037.g011872


Description : not classified & original description: CDS=1-2532


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0037.g011872

Target Alias Description ECC score Gene Family Method Actions
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g012623 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034865 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099122 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g34560 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06831 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07401 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24209.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67429.t1 Aspi01Gene67429 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000844 No alias not classified & original description: CDS=1-1557 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g009689 No alias not classified & original description: CDS=1-2529 0.04 OrthoFinder output from all 47 species
Azfi_s0020.g015372 OTP86 not classified & original description: CDS=1-2592 0.04 OrthoFinder output from all 47 species
Azfi_s0093.g043166 No alias not classified & original description: CDS=1-1980 0.04 OrthoFinder output from all 47 species
Azfi_s0389.g067649 OTP84 not classified & original description: CDS=1-2388 0.03 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.03 OrthoFinder output from all 47 species
Cba_g00281 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g04086 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g28001 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g75371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08951 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16964 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12101 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_40766 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g01115.1 LOC_Os01g01115 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os01g51790.1 LOC_Os01g51790 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os02g44480.1 LOC_Os02g44480 Pentatricopeptide repeat-containing protein At5g39350... 0.02 OrthoFinder output from all 47 species
LOC_Os03g52475.1 LOC_Os03g52475 Pentatricopeptide repeat-containing protein At3g28660... 0.04 OrthoFinder output from all 47 species
LOC_Os03g63510.1 LOC_Os03g63510 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os05g05490.1 LOC_Os05g05490 Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
LOC_Os05g38190.2 LOC_Os05g38190 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
LOC_Os07g15570.1 CRR2, LOC_Os07g15570 Pentatricopeptide repeat-containing protein At2g46050,... 0.02 OrthoFinder output from all 47 species
LOC_Os12g06650.1 LOC_Os12g06650 Pentatricopeptide repeat-containing protein At4g15720... 0.02 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Len_g16432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_385322g0010 OTP82 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Msp_g41092 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41129 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06724 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30091 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000500 CRR22 not classified & original description: CDS=1-1614 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002944 No alias not classified & original description: CDS=1-2634 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014482 No alias not classified & original description: CDS=1-1119 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015137 No alias not classified & original description: CDS=1-2661 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015555 No alias not classified & original description: CDS=1-2496 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017584 No alias not classified & original description: CDS=1-3165 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019756 No alias not classified & original description: CDS=1-2544 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021986 No alias not classified & original description: CDS=164-3082 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0345.g027287 No alias not classified & original description: CDS=1-2001 0.03 OrthoFinder output from all 47 species
Sam_g07204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Spa_g15227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species
Zm00001e020567_P001 Zm00001e020567 RNA editing factor (MEF7) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 174 220
IPR002885 Pentatricopeptide_repeat 276 322
IPR002885 Pentatricopeptide_repeat 581 627
IPR002885 Pentatricopeptide_repeat 378 424
IPR002885 Pentatricopeptide_repeat 479 525
IPR002885 Pentatricopeptide_repeat 683 729
IPR002885 Pentatricopeptide_repeat 86 120
IPR002885 Pentatricopeptide_repeat 555 577
IPR002885 Pentatricopeptide_repeat 759 782
IPR002885 Pentatricopeptide_repeat 352 375
IPR002885 Pentatricopeptide_repeat 657 681
IPR002885 Pentatricopeptide_repeat 789 815
IPR002885 Pentatricopeptide_repeat 148 171
IPR002885 Pentatricopeptide_repeat 250 272
No external refs found!