Sacu_v1.1_s0036.g011516 (EDF2, AtRAV2, TEM2,...)


Aliases : EDF2, AtRAV2, TEM2, RAV2, RAP2.8

Description : AP2-RAV-type transcription factor *(EDF) & original description: CDS=1-2190


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0036.g011516
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00238950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AMTR_s00018p00040300 NGA1,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AT1G25560 TEM1, EDF1 AP2/B3 transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.03 OrthoFinder output from all 47 species
Adi_g058439 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Adi_g058440 EDF3 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Adi_g114045 NGA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04649 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11266 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ceric.22G022700.1 TEM1, EDF1,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dde_g27008 EDF3 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dde_g48458 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02670 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011947001 EDF2, AtRAV2,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
LOC_Os01g04800.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45850.1 NGA3, LOC_Os02g45850 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
LOC_Os03g02900.1 NGA1, LOC_Os03g02900 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
LOC_Os04g49230.1 LOC_Os04g49230 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
LOC_Os06g01860.1 LOC_Os06g01860 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
LOC_Os08g06120.1 NGA1, LOC_Os08g06120 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
LOC_Os12g06080.1 LOC_Os12g06080 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Len_g14264 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Len_g36994 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Len_g57809 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
MA_10428163g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
MA_3834g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
Nbi_g11598 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ore_g44549 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Pir_g49278 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.05 OrthoFinder output from all 47 species
Pnu_g09403 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Sam_g30092 No alias AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Spa_g28812 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e000156_P001 NGA3, Zm00001e000156 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Zm00001e020092_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Zm00001e040214_P001 NGA3, Zm00001e040214 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Zm00001e041372_P001 NGA1, Zm00001e041372 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 206 253
IPR003340 B3_DNA-bd 384 478
No external refs found!