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  5. Sacu_v1.1_s0034.g011307

Sacu_v1.1_s0034.g011307


Description : not classified & original description: CDS=188-952


Gene families : OG0002761 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002761_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0034.g011307
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AT5G66240 No alias Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g001123 No alias component *(S2Lb/SWD2) of COMPASS histone trimethylation... 0.03 OrthoFinder output from all 47 species
Ala_g05621 No alias component *(S2Lb/SWD2) of COMPASS histone trimethylation... 0.03 OrthoFinder output from all 47 species
Aop_g06044 No alias component *(S2Lb/SWD2) of COMPASS histone trimethylation... 0.03 OrthoFinder output from all 47 species
Ceric.16G020200.1 Ceric.16G020200 component *(S2Lb/SWD2) of COMPASS histone trimethylation... 0.04 OrthoFinder output from all 47 species
Sam_g19764 No alias component *(S2Lb/SWD2) of COMPASS histone trimethylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0018142 protein-DNA covalent cross-linking IEP HCCA
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 50 85
IPR024977 Apc4_WD40_dom 142 186
No external refs found!