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  5. Sacu_v1.1_s0034.g011264

Sacu_v1.1_s0034.g011264


Description : not classified & original description: CDS=1634-4543


Gene families : OG0002452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0034.g011264

Target Alias Description ECC score Gene Family Method Actions
AT1G03370 No alias C2 calcium/lipid-binding and GRAM domain containing protein 0.03 OrthoFinder output from all 47 species
Aop_g65715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23957 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01007656001 No alias C2 and GRAM domain-containing protein At5g50170... 0.03 OrthoFinder output from all 47 species
LOC_Os06g19400.1 LOC_Os06g19400 C2 and GRAM domain-containing protein At1g03370... 0.03 OrthoFinder output from all 47 species
LOC_Os08g38440.1 LOC_Os08g38440 C2 and GRAM domain-containing protein At1g03370... 0.04 OrthoFinder output from all 47 species
Sam_g08286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR004182 GRAM 631 694
IPR031968 VASt 197 343
IPR031968 VASt 804 947
IPR000008 C2_dom 480 578
No external refs found!