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  5. Sacu_v1.1_s0034.g011197

Sacu_v1.1_s0034.g011197


Description : RNA polymerase-IV-positioning factor *(SHH) & original description: CDS=118-903


Gene families : OG0001794 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001794_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0034.g011197

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00262800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Zm00001e033896_P001 Zm00001e033896 RNA polymerase-IV-positioning factor (SHH).... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032001 SAWADEE_dom 106 233
IPR002885 Pentatricopeptide_repeat 13 35
IPR002885 Pentatricopeptide_repeat 115 142
IPR002885 Pentatricopeptide_repeat 146 173
IPR002885 Pentatricopeptide_repeat 39 87
IPR002885 Pentatricopeptide_repeat 180 210
IPR002885 Pentatricopeptide_repeat 55 71
IPR002885 Pentatricopeptide_repeat 152 174
No external refs found!