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  5. Sacu_v1.1_s0032.g010895

Sacu_v1.1_s0032.g010895


Description : not classified & original description: CDS=1-2118


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0032.g010895
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Als_g05066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20063 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Msp_g25744 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g38716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g008480.4.1 Solyc01g008480 Pentatricopeptide repeat-containing protein At2g01390... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
CC GO:0009360 DNA polymerase III complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 201 230
IPR002885 Pentatricopeptide_repeat 236 279
IPR033443 PPR_long 493 622
No external refs found!