1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0029.g010185

Sacu_v1.1_s0029.g010185 (ATCSP2, GRP2, CSDP2, CSP2)


Aliases : ATCSP2, GRP2, CSDP2, CSP2

Description : cold-responsive mRNA chaperone *(CSD) & original description: CDS=1-465


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0029.g010185
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT4G38680 ATCSP2, GRP2, CSDP2, CSP2 glycine rich protein 2 0.02 OrthoFinder output from all 47 species
Aspi01Gene09691.t1 GRP2B, ATGRP2B,... cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene15575.t1 ATCSP2, GRP2,... cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g30246 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Pp3c5_7920V3.1 GRP2B, ATGRP2B,... cold shock domain protein 1 0.01 OrthoFinder output from all 47 species
Solyc01g111300.4.1 GRP2B, ATGRP2B,... RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 OrthoFinder output from all 47 species
Zm00001e041725_P001 CSDP1, Zm00001e041725 RNA chaperone (CSP). mRNA chaperone (CSD) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 7 71
No external refs found!