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  5. Sacu_v1.1_s0025.g009384

Sacu_v1.1_s0025.g009384


Description : not classified & original description: CDS=123-3881


Gene families : OG0007491 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007491_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0025.g009384

Target Alias Description ECC score Gene Family Method Actions
Ala_g03588 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05627 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g043991 OTP84 not classified & original description: CDS=230-3472 0.04 OrthoFinder output from all 47 species
Cba_g13501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G002000.1 Ceric.15G002000 not classified & original description: pacid=50640344... 0.06 OrthoFinder output from all 47 species
Ceric.17G084700.1 Ceric.17G084700 not classified & original description: pacid=50618199... 0.06 OrthoFinder output from all 47 species
Dde_g03497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21687 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13553 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08396 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 175 221
IPR002885 Pentatricopeptide_repeat 579 624
IPR002885 Pentatricopeptide_repeat 483 527
IPR002885 Pentatricopeptide_repeat 385 425
IPR002885 Pentatricopeptide_repeat 456 478
IPR002885 Pentatricopeptide_repeat 77 103
IPR002885 Pentatricopeptide_repeat 251 272
IPR002885 Pentatricopeptide_repeat 280 309
IPR002885 Pentatricopeptide_repeat 717 743
IPR032867 DYW_dom 876 952
No external refs found!