1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0025.g009349

Sacu_v1.1_s0025.g009349 (AMS)


Aliases : AMS

Description : transcriptional regulator *(DYT1/AMS) & original description: CDS=462-2342


Gene families : OG0006543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006543_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0025.g009349
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00072970 AMS,... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Aop_g70080 AMS transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Dde_g46165 AMS transcriptional regulator *(DYT1/AMS) & original... 0.06 OrthoFinder output from all 47 species
GSVIVT01013720001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01013744001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01024008001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
LOC_Os02g02820.1 AMS, LOC_Os02g02820 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Msp_g44010 AMS transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g11389 AMS transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Pp3c13_14400V3.1 Pp3c13_14400 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g01138 AMS transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Solyc08g062780.2.1 AMS, Solyc08g062780 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Spa_g47867 AMS transcriptional regulator *(DYT1/AMS) & original... 0.02 OrthoFinder output from all 47 species
Tin_g45475 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 401 444
IPR025610 MYC/MYB_N 5 152
No external refs found!