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  5. Sacu_v1.1_s0024.g009059

Sacu_v1.1_s0024.g009059


Description : pre-mRNA splicing factor *(SF1) & original description: CDS=175-2898


Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0024.g009059

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00155240 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Adi_g087207 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g52145 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13693 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g01316 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G107100.1 Ceric.01G107100 pre-mRNA splicing factor *(SF1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G060800.1 Ceric.21G060800 pre-mRNA splicing factor *(SF1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.25G061400.1 Ceric.25G061400 pre-mRNA splicing factor *(SF1) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.10 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre12.g553750 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Ehy_g10028 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014212001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
Lfl_g04920 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432977g0010 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
MA_11962g0020 No alias pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
MA_8555g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g15050.1 No alias pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
Ore_g04834 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08596 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16656 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18388 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09720 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18592 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27159 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g006010.3.1 Solyc01g006010 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g57136 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e008383_P001 Zm00001e008383 pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
Zm00001e040741_P001 Zm00001e040741 pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 583 652
IPR004088 KH_dom_type_1 353 426
IPR032570 SF1-HH 224 334
No external refs found!