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  5. Sacu_v1.1_s0024.g009014

Sacu_v1.1_s0024.g009014


Description : component *(U2B) of U2 snRNP complex & original description: CDS=80-769


Gene families : OG0003415 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0024.g009014
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Adi_g085490 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Cre13.g566700 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Mp5g12580.1 No alias component U1A of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Ppi_g08271 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g02437 U2B'' component *(U2B) of U2 snRNP complex & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 12 82
IPR000504 RRM_dom 157 216
No external refs found!