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  5. Sacu_v1.1_s0022.g008567

Sacu_v1.1_s0022.g008567


Description : RsmC-type rRNA methyltransferase & original description: CDS=390-1571


Gene families : OG0006709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006709_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0022.g008567
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Aev_g29589 No alias RsmC-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g13835 No alias RsmC-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433107g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Smo99812 No alias No description available 0.04 OrthoFinder output from all 47 species
Zm00001e003225_P001 Zm00001e003225 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007848 Small_mtfrase_dom 206 301
IPR027370 Znf-RING_euk 10 40
No external refs found!