1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00006p00242700

AMTR_s00006p00242700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.119

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.SWA1 assembly factor


Gene families : OG_01_0005878 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005878_tree ,
OG_02_0006928 (LandPlants) Phylogenetic Tree(s): OG_02_0006928_tree ,
OG_03_0008986 (SeedPlants) Phylogenetic Tree(s): OG_03_0008986_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00242700
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT2G47990 EDA13, EDA19, SWA1 transducin family protein / WD-40 repeat family protein 0.03 Archaeplastida
GSVIVT01011022001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
LOC_Os07g12320.1 No alias SSU processome assembly factor (SWA1) 0.05 Archaeplastida
Mp4g00830.1 No alias SSU processome assembly factor (SWA1) 0.03 Archaeplastida
Solyc05g010470.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e033137_P001 No alias SSU processome assembly factor (SWA1) 0.02 Archaeplastida
AT2G47990 EDA13, EDA19, SWA1 transducin family protein / WD-40 repeat family protein 0.03 LandPlants
GSVIVT01011022001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 LandPlants
LOC_Os07g12320.1 No alias SSU processome assembly factor (SWA1) 0.03 LandPlants
Mp4g00830.1 No alias SSU processome assembly factor (SWA1) 0.03 LandPlants
Pp3c8_11620V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 LandPlants
Solyc05g010470.4.1 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e033137_P001 No alias SSU processome assembly factor (SWA1) 0.02 LandPlants
AT2G47990 EDA13, EDA19, SWA1 transducin family protein / WD-40 repeat family protein 0.03 SeedPlants
LOC_Os07g12320.1 No alias SSU processome assembly factor (SWA1) 0.03 SeedPlants
Solyc05g010470.4.1 No alias no hits & (original description: none) 0.03 SeedPlants
Zm00001e033137_P001 No alias SSU processome assembly factor (SWA1) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR018983 U3_snoRNA-assocProt_15_C 369 514
IPR001680 WD40_repeat 114 152
IPR001680 WD40_repeat 158 195
IPR001680 WD40_repeat 206 235
IPR001680 WD40_repeat 240 285
No external refs found!