Sacu_v1.1_s0020.g008151

Description : component *(uL29) of large ribosomal-subunit (LSU) proteome & original description: CDS=1-3834

Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0020.g008151

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00109240	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.02	OrthoFinder output from all 47 species
Adi_g003802	SLO1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g003845	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g004372	EMB2758	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g004462	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g009247	EMB2758	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g034292	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g042910	EMB2261	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g049842	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g068263	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g069023	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g069066	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g099180	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g100823	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g29185	No alias	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g24034	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g18238	EMB2758	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g63751	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g27894	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g31088	EMB2261	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0002.g001303	No alias	not classified & original description: CDS=1-2292	0.03	OrthoFinder output from all 47 species
Azfi_s0004.g008403	EMB2758	not classified & original description: CDS=1-1560	0.03	OrthoFinder output from all 47 species
Azfi_s0008.g011342	No alias	not classified & original description: CDS=1-1953	0.03	OrthoFinder output from all 47 species
Azfi_s0008.g011649	No alias	not classified & original description: CDS=1-3195	0.03	OrthoFinder output from all 47 species
Azfi_s0009.g011901	No alias	not classified & original description: CDS=1-1638	0.05	OrthoFinder output from all 47 species
Azfi_s0010.g012398	No alias	not classified & original description: CDS=1-3681	0.03	OrthoFinder output from all 47 species
Azfi_s0045.g029802	No alias	not classified & original description: CDS=1-2208	0.04	OrthoFinder output from all 47 species
Azfi_s0069.g036571	No alias	not classified & original description: CDS=1-1638	0.03	OrthoFinder output from all 47 species
Azfi_s0118.g046610	OTP86	not classified & original description: CDS=1-2490	0.06	OrthoFinder output from all 47 species
Azfi_s0143.g051490	No alias	not classified & original description: CDS=1-2688	0.04	OrthoFinder output from all 47 species
Azfi_s0345.g065835	No alias	not classified & original description: CDS=1-1926	0.04	OrthoFinder output from all 47 species
Azfi_s0373.g067166	No alias	not classified & original description: CDS=1-2166	0.04	OrthoFinder output from all 47 species
Azfi_s0999.g094975	No alias	not classified & original description: CDS=29-2698	0.04	OrthoFinder output from all 47 species
Azfi_s3922.g117339	No alias	not classified & original description: CDS=1-831	0.02	OrthoFinder output from all 47 species
Cba_g07200	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g29942	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.22G009800.1	Ceric.22G009800	not classified & original description: pacid=50615356...	0.04	OrthoFinder output from all 47 species
Cre12.g483700	OSB4	Cell cycle.organelle machineries.DNA...	0.02	OrthoFinder output from all 47 species
Dac_g04499	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Gb_34736	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	OrthoFinder output from all 47 species
LOC_Os03g63560.1	LOC_Os03g63560	OTP70 plastidial RNA splicing factor	0.02	OrthoFinder output from all 47 species
Len_g18053	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g21957	CRR22	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Len_g54965	CRR22	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Len_g57437	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05604	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g07723	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g40928	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14494	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g20280	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g20955	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g48694	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g20268	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g20274	OTP86	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g29271	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g30346	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g02540	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g05957	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g13497	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g31112	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g66518	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g10206	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17432	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g22239	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g43340	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g53376	No alias	ssDNA-binding protein *(OSB) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012385	No alias	not classified & original description: CDS=1-1908	0.03	OrthoFinder output from all 47 species
Sam_g05074	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g07051	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g14278	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g14540	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g15563	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g19797	No alias	not classified & original description: none	0.1	OrthoFinder output from all 47 species
Sam_g29816	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g35736	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g38015	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g39952	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo118230	CRR22	Pentatricopeptide repeat-containing protein At3g12770...	0.03	OrthoFinder output from all 47 species
Smo132819	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	OrthoFinder output from all 47 species
Spa_g25072	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g04082	CRR22	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g05207	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g07666	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g23282	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g26528	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g30432	CRR22	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e037542_P001	Zm00001e037542	Pentatricopeptide repeat-containing protein At4g16470...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	214	236
IPR002885	Pentatricopeptide_repeat	549	572
IPR002885	Pentatricopeptide_repeat	881	909
IPR002885	Pentatricopeptide_repeat	142	172
IPR002885	Pentatricopeptide_repeat	1158	1182
IPR002885	Pentatricopeptide_repeat	651	676
IPR002885	Pentatricopeptide_repeat	447	468
IPR002885	Pentatricopeptide_repeat	852	874
IPR001854	Ribosomal_L29/L35	306	361
IPR002885	Pentatricopeptide_repeat	472	518
IPR002885	Pentatricopeptide_repeat	40	86
IPR002885	Pentatricopeptide_repeat	574	621
IPR002885	Pentatricopeptide_repeat	980	1028
IPR002885	Pentatricopeptide_repeat	677	724
IPR002885	Pentatricopeptide_repeat	1081	1128
IPR002885	Pentatricopeptide_repeat	779	825

External Links

No external refs found!

Sacu_v1.1_s0020.g008151

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation