Sacu_v1.1_s0019.g007989


Description : component *(Magoh) of RNA quality control Exon Junction complex & original description: CDS=409-1863


Gene families : OG0006626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006626_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0019.g007989
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00177480 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Azfi_s0010.g012286 No alias not classified & original description: CDS=1-654 0.04 OrthoFinder output from all 47 species
Ppi_g53619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g10859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21878 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008380 RNA splicing IEA Interproscan
CC GO:0035145 exon-exon junction complex IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004045 Glutathione_S-Trfase_N 34 99
IPR013078 His_Pase_superF_clade-1 286 483
IPR004023 Mago_nashi 14 155
No external refs found!