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  5. Sacu_v1.1_s0019.g007727

Sacu_v1.1_s0019.g007727 (ATBPC4, BPC4, BBR)


Aliases : ATBPC4, BPC4, BBR

Description : BBR/BPC-type transcription factor & original description: CDS=1-915


Gene families : OG0000626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0019.g007727

Target Alias Description ECC score Gene Family Method Actions
Als_g07241 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24190 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57842.t2 BPC3, ATBPC3,... BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g02269 BBR/BPC5, BPC5, ATBPC5 BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011589001 ATBPC1, BPC1, BBR RNA biosynthesis.transcriptional activation.BBR/BPC... 0.01 OrthoFinder output from all 47 species
Msp_g05439 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30067 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11843 No alias BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16450 No alias BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03210 BBR/BPC5, BPC5, ATBPC5 BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03976 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021942_P001 ATBPC2, BPC2,... transcription factor (BBR/BPC) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR010409 GAGA-bd_tscrpt_act 1 304
No external refs found!