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  5. Sacu_v1.1_s0018.g007503

Sacu_v1.1_s0018.g007503 (AGO1)


Aliases : AGO1

Description : not classified & original description: CDS=68-2746


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0018.g007503

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265690 PNH, AGO10, ZLL,... Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
Adi_g088499 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33064 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Aop_g05330 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Aspi01Gene18541.t1 AGO1, Aspi01Gene18541 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47903.t1 AGO1, Aspi01Gene47903 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g45070.1 AGO1, LOC_Os02g45070 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Len_g12529 AGO7, ZIP not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g18110.1 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Msp_g13472 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Msp_g27281 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Msp_g43146 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10399 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g11818 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30168 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08362 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Ppi_g18600 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Sam_g10517 No alias siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Smo110151 AGO1 Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
Spa_g57163 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.01 OrthoFinder output from all 47 species
Tin_g08802 AGO1 regulatory protein *(AGO7) of transacTing siRNA pathway... 0.02 OrthoFinder output from all 47 species
Zm00001e010349_P002 AGO1, Zm00001e010349 Protein argonaute 18 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Zm00001e025496_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.02 OrthoFinder output from all 47 species
Zm00001e037347_P002 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR003100 PAZ_dom 253 355
IPR032474 Argonaute_N 35 161
IPR032473 Argonaute_Mid_dom 421 478
IPR014811 ArgoL1 172 219
IPR003165 Piwi 514 847
No external refs found!