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  5. Sacu_v1.1_s0018.g007478

Sacu_v1.1_s0018.g007478


Description : not classified & original description: CDS=1-2787


Gene families : OG0011726 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011726_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0018.g007478

Target Alias Description ECC score Gene Family Method Actions
Adi_g015292 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13982 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0074.g037453 No alias not classified & original description: CDS=1-2481 0.06 OrthoFinder output from all 47 species
Ceric.36G054500.1 Ceric.36G054500 not classified & original description: pacid=50568462... 0.05 OrthoFinder output from all 47 species
Dde_g09936 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g13979 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g40082 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g15149 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g08796 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g08139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g16988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 543 593
IPR002885 Pentatricopeptide_repeat 368 414
IPR002885 Pentatricopeptide_repeat 94 141
IPR002885 Pentatricopeptide_repeat 720 741
IPR002885 Pentatricopeptide_repeat 172 195
IPR002885 Pentatricopeptide_repeat 301 331
IPR002885 Pentatricopeptide_repeat 648 677
IPR002885 Pentatricopeptide_repeat 619 645
IPR002885 Pentatricopeptide_repeat 784 804
IPR002885 Pentatricopeptide_repeat 750 773
No external refs found!