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  5. Sacu_v1.1_s0018.g007442

Sacu_v1.1_s0018.g007442


Description : Trihelix-type transcription factor & original description: CDS=174-3533


Gene families : OG0002976 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002976_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0018.g007442
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Aev_g03049 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05741 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.03 OrthoFinder output from all 47 species
Cre02.g093950 No alias No description available 0.01 OrthoFinder output from all 47 species
Len_g58569 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27442 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g51044 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g078080.4.1 Solyc03g078080 plastidial UMP kinase (PUMPKIN) 0.05 OrthoFinder output from all 47 species
Spa_g07225 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e018537_P001 Zm00001e018537 plastidial UMP kinase (PUMPKIN) 0.03 OrthoFinder output from all 47 species
Zm00001e028275_P001 Zm00001e028275 plastidial UMP kinase (PUMPKIN) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 675 769
IPR001048 Asp/Glu/Uridylate_kinase 855 1089
IPR000504 RRM_dom 92 160
IPR000504 RRM_dom 235 305
No external refs found!