Sacu_v1.1_s0018.g007436


Description : not classified & original description: CDS=1-1323


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0018.g007436
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00587p00011650 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Aev_g42949 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04425 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68927 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.03 OrthoFinder output from all 47 species
Dac_g19006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38568 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06831 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g44004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_36775 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g44140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24905 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28517 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g29651 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004138 No alias not classified & original description: CDS=1-2646 0.03 OrthoFinder output from all 47 species
Sam_g07845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo91775 No alias Pentatricopeptide repeat-containing protein At4g25270,... 0.03 OrthoFinder output from all 47 species
Solyc03g116840.3.1 Solyc03g116840 RNA editing factor (OTP81) 0.02 OrthoFinder output from all 47 species
Solyc06g064600.1.1 Solyc06g064600 Pentatricopeptide repeat-containing protein At1g56690,... 0.02 OrthoFinder output from all 47 species
Solyc07g055310.1.1 Solyc07g055310 Pentatricopeptide repeat-containing protein At2g41080... 0.03 OrthoFinder output from all 47 species
Solyc11g067210.1.1 Solyc11g067210 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Spa_g55625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05368 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43909 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e008200_P001 Zm00001e008200 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 206 253
IPR002885 Pentatricopeptide_repeat 105 151
IPR002885 Pentatricopeptide_repeat 309 355
IPR002885 Pentatricopeptide_repeat 3 49
IPR002885 Pentatricopeptide_repeat 383 402
IPR002885 Pentatricopeptide_repeat 79 103
No external refs found!