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  5. Sacu_v1.1_s0015.g006562

Sacu_v1.1_s0015.g006562


Description : not classified & original description: CDS=201-3710


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0015.g006562

Target Alias Description ECC score Gene Family Method Actions
Adi_g110799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g59510.1 LOC_Os04g59510 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
MA_3931g0010 No alias PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004852 uroporphyrinogen-III synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0045048 protein insertion into ER membrane IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 714 764
IPR019787 Znf_PHD-finger 790 831
No external refs found!