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  5. Sacu_v1.1_s0015.g006429

Sacu_v1.1_s0015.g006429


Description : not classified & original description: CDS=583-1080


Gene families : OG0009008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0015.g006429
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Ala_g01595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G096800.1 Ceric.03G096800 not classified & original description: pacid=50572329... 0.02 OrthoFinder output from all 47 species
LOC_Os02g01365.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!