Sacu_v1.1_s0013.g005946


Description : not classified & original description: CDS=1-1029


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0013.g005946

Target Alias Description ECC score Gene Family Method Actions
AT3G16610 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067305 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g099122 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06425 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14037 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36681 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45795.t1 Aspi01Gene45795 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67429.t1 Aspi01Gene67429 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000844 No alias not classified & original description: CDS=1-1557 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g009689 No alias not classified & original description: CDS=1-2529 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010531 CRR2 not classified & original description: CDS=1-1098 0.03 OrthoFinder output from all 47 species
Azfi_s0389.g067649 OTP84 not classified & original description: CDS=1-2388 0.04 OrthoFinder output from all 47 species
Azfi_s0619.g079560 EMB2758 not classified & original description: CDS=1-2046 0.04 OrthoFinder output from all 47 species
Azfi_s0808.g087728 CRR22 not classified & original description: CDS=1-2094 0.04 OrthoFinder output from all 47 species
Azfi_s1835.g107332 CRR22 not classified & original description: CDS=1-2094 0.04 OrthoFinder output from all 47 species
Cba_g00281 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g04086 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g28001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45872 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08951 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17092 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13325 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g52475.1 LOC_Os03g52475 Pentatricopeptide repeat-containing protein At3g28660... 0.04 OrthoFinder output from all 47 species
LOC_Os05g38190.2 LOC_Os05g38190 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
LOC_Os07g15570.1 CRR2, LOC_Os07g15570 Pentatricopeptide repeat-containing protein At2g46050,... 0.03 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
Len_g03390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07754 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g40942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06724 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g56906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30091 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30285 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09062 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002062 No alias not classified & original description: CDS=1-1716 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003776 No alias not classified & original description: CDS=1-3675 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013079 No alias not classified & original description: CDS=41-367 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015555 No alias not classified & original description: CDS=1-2496 0.03 OrthoFinder output from all 47 species
Sam_g07204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo134538 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo83034 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Tin_g09800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species
Zm00001e013713_P001 Zm00001e013713 Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
Zm00001e020567_P001 Zm00001e020567 RNA editing factor (MEF7) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 144 170
IPR002885 Pentatricopeptide_repeat 74 103
IPR002885 Pentatricopeptide_repeat 173 201
IPR002885 Pentatricopeptide_repeat 245 269
IPR002885 Pentatricopeptide_repeat 46 68
IPR002885 Pentatricopeptide_repeat 273 303
No external refs found!